That I have not seen. Many publishers are happy to work with author/packagers who bring in clean files, although I’ve spent months reworking “clean” files that came in using non-professional type with awful H&Js and strange embedded images, and in most of those cases it would have been much easier to just start from scratch.
I can tell you that Chronicle, Routledge, many of the Random House imprints and most university publishers are quite elated to get packaged clean files that are typeset competently. Such files are very rare, as it’s infrequent that a gifted author is also a gifted typographer, but when they materialize they are oohed and aahed over by excited ADs and TDs like a cute baby.